IL_3J8G_025

3D structure

PDB id

3J8G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Electron cryo-microscopy structure of EngA bound with the 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

AGCC*GGCU

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary: AGCC,GGCU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J8G_025 not in the Motif Atlas

Geometric match to IL_1MFQ_004

Geometric discrepancy: 0.1715

The information below is about IL_1MFQ_004

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

3J8G|1|B|A|689
3J8G|1|B|G|690
3J8G|1|B|C|691
3J8G|1|B|C|692
*
3J8G|1|B|G|770
3J8G|1|B|G|771
3J8G|1|B|C|772
3J8G|1|B|U|773

Current chains

Chain B

23S rRNA

Nearby chains

Chain 6

50S ribosomal protein L34

Chain C

50S ribosomal protein L2