IL_3J8G_052

3D structure

PDB id

3J8G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Electron cryo-microscopy structure of EngA bound with the 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CGUU*AAGUG

Length

9 nucleotides

Bulged bases

3J8G|1|B|G|1248

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J8G_052 not in the Motif Atlas

Geometric match to IL_3WBM_002

Geometric discrepancy: 0.3125

The information below is about IL_3WBM_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

3J8G|1|B|C|1196
3J8G|1|B|G|1197
3J8G|1|B|U|1198
3J8G|1|B|U|1199
*
3J8G|1|B|A|1246
3J8G|1|B|A|1247
3J8G|1|B|G|1248
3J8G|1|B|U|1249
3J8G|1|B|G|1250

Current chains

Chain B

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain L

50S ribosomal protein L15

Chain Q

50S ribosomal protein L20