IL_3J8G_079

3D structure

PDB id

3J8G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Electron cryo-microscopy structure of EngA bound with the 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

3J8G|1|B|A|1900

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J8G_079 not in the Motif Atlas

Homologous match to IL_7RQB_072

Geometric discrepancy: 0.2958

The information below is about IL_7RQB_072

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_16396.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

3J8G|1|B|U|1841
3J8G|1|B|G|1842
*
3J8G|1|B|U|1898
3J8G|1|B|A|1899
3J8G|1|B|A|1900
3J8G|1|B|A|1901

Current chains

Chain B

23S rRNA

Nearby chains

Chain X

GTPase Der