IL_3J8G_123

3D structure

PDB id

3J8G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Electron cryo-microscopy structure of EngA bound with the 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

GGC*GCAC

Length

7 nucleotides

Bulged bases

3J8G|1|B|A|2497

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J8G_123 not in the Motif Atlas

Geometric match to IL_3C3Z_002

Geometric discrepancy: 0.2434

The information below is about IL_3C3Z_002

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

3J8G|1|B|G|2454
3J8G|1|B|G|2455
3J8G|1|B|C|2456
*
3J8G|1|B|G|2495
3J8G|1|B|C|2496
3J8G|1|B|A|2497
3J8G|1|B|C|2498

Current chains

Chain B

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain M

50S ribosomal protein L16

Chain X

GTPase Der