IL_3J92_027

3D structure

PDB id

3J92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure and assembly pathway of the ribosome quality control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCC*GCGAC

Length

8 nucleotides

Bulged bases

3J92|1|5|G|666

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J92_027 not in the Motif Atlas

Geometric match to IL_4V88_411

Geometric discrepancy: 0.3934

The information below is about IL_4V88_411

Detailed Annotation

Minor groove platform with extra cWW

Broad Annotation

Minor groove platform

Motif group

IL_46796.2

Basepair signature

cWW-tHS-cWW-cWW

Number of instances in this motif group

6

Unit IDs

3J92|1|5|G|488
3J92|1|5|C|489
3J92|1|5|C|490
*
3J92|1|5|G|664
3J92|1|5|C|665
3J92|1|5|G|666
3J92|1|5|A|667
3J92|1|5|C|668

Current chains

Chain 5

28S rRNA

Nearby chains

Chain C

uL4

Chain r

eL28