IL_3J92_083

3D structure

PDB id

3J92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure and assembly pathway of the ribosome quality control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UAUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

3J92|1|5|A|1960

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J92_083 not in the Motif Atlas

Geometric match to IL_4V9F_042

Geometric discrepancy: 0.2456

The information below is about IL_4V9F_042

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_99692.3

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

3J92|1|5|U|1957
3J92|1|5|A|1958
3J92|1|5|U|1959
3J92|1|5|A|1960
3J92|1|5|G|1961
3J92|1|5|A|1962
3J92|1|5|C|1963
3J92|1|5|A|1964
3J92|1|5|G|1965
*
3J92|1|5|C|2022
3J92|1|5|C|2023
3J92|1|5|G|2024
3J92|1|5|A|2025
3J92|1|5|A|2026

Current chains

Chain 5

28S rRNA

Nearby chains

Chain S

eL20

Chain m

eL40

Chain s

uL10