IL_3J92_107

3D structure

PDB id

3J92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure and assembly pathway of the ribosome quality control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AGUCGG*CUGU

Length

10 nucleotides

Bulged bases

3J92|1|5|G|3839

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J92_107 not in the Motif Atlas

Geometric match to IL_4V9F_062

Geometric discrepancy: 0.1299

The information below is about IL_4V9F_062

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_28217.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

3J92|1|5|A|2850
3J92|1|5|G|2851
3J92|1|5|U|2852
3J92|1|5|C|2853
3J92|1|5|G|2854
3J92|1|5|G|2855
*
3J92|1|5|C|3837
3J92|1|5|U|3838
3J92|1|5|G|3839
3J92|1|5|U|3840

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain V

uL14