IL_3J92_108

3D structure

PDB id

3J92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure and assembly pathway of the ribosome quality control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

3J92|1|5|U|2880

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J92_108 not in the Motif Atlas

Geometric match to IL_4V9F_063

Geometric discrepancy: 0.102

The information below is about IL_4V9F_063

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_20700.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

10

Unit IDs

3J92|1|5|C|2867
3J92|1|5|G|2868
3J92|1|5|U|2869
3J92|1|5|A|2870
3J92|1|5|A|2871
3J92|1|5|C|2872
*
3J92|1|5|G|2877
3J92|1|5|G|2878
3J92|1|5|A|2879
3J92|1|5|U|2880
3J92|1|5|A|2881
3J92|1|5|A|2882
3J92|1|5|G|2883

Current chains

Chain 5

28S rRNA

Nearby chains

Chain p

eL43