IL_3J92_121

3D structure

PDB id

3J92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure and assembly pathway of the ribosome quality control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

3J92|1|5|A|3785, 3J92|1|5|C|3791, 3J92|1|5|C|3810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J92_121 not in the Motif Atlas

Geometric match to IL_5TBW_090

Geometric discrepancy: 0.1396

The information below is about IL_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

3J92|1|5|C|3781
3J92|1|5|C|3782
3J92|1|5|A|3783
3J92|1|5|A|3784
3J92|1|5|A|3785
3J92|1|5|U|3786
3J92|1|5|G|3787
3J92|1|5|C|3788
3J92|1|5|C|3789
3J92|1|5|U|3790
3J92|1|5|C|3791
3J92|1|5|G|3792
*
3J92|1|5|C|3808
3J92|1|5|G|3809
3J92|1|5|C|3810
3J92|1|5|G|3811

Current chains

Chain 5

28S rRNA

Nearby chains