IL_3J92_122

3D structure

PDB id

3J92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure and assembly pathway of the ribosome quality control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCGG*UAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J92_122 not in the Motif Atlas

Homologous match to IL_5TBW_091

Geometric discrepancy: 0.0878

The information below is about IL_5TBW_091

Detailed Annotation

Major groove platform with extra pair

Broad Annotation

Major groove platform

Motif group

IL_63450.5

Basepair signature

cWW-cHS-cWW-cWW-cWW

Number of instances in this motif group

7

Unit IDs

3J92|1|5|G|3895
3J92|1|5|C|3896
3J92|1|5|G|3897
3J92|1|5|G|3898
*
3J92|1|5|U|4563
3J92|1|5|A|4564
3J92|1|5|C|4565

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain O

uL13