IL_3J92_138

3D structure

PDB id

3J92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure and assembly pathway of the ribosome quality control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J92_138 not in the Motif Atlas

Homologous match to IL_5TBW_106

Geometric discrepancy: 0.1078

The information below is about IL_5TBW_106

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_65585.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

3J92|1|5|C|4412
3J92|1|5|C|4413
3J92|1|5|A|4414
3J92|1|5|A|4415
3J92|1|5|G|4416
*
3J92|1|5|C|4426
3J92|1|5|G|4427
3J92|1|5|A|4428
3J92|1|5|C|4429
3J92|1|5|G|4430

Current chains

Chain 5

28S rRNA

Nearby chains

Chain I

uL16

Chain m

eL40