IL_3J92_155

3D structure

PDB id

3J92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure and assembly pathway of the ribosome quality control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAUUAU*AGAAUC

Length

12 nucleotides

Bulged bases

3J92|1|5|A|4708

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J92_155 not in the Motif Atlas

Geometric match to IL_5J7L_350

Geometric discrepancy: 0.2655

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

3J92|1|5|G|4680
3J92|1|5|A|4681
3J92|1|5|U|4682
3J92|1|5|U|4683
3J92|1|5|A|4684
3J92|1|5|U|4685
*
3J92|1|5|A|4705
3J92|1|5|G|4706
3J92|1|5|A|4707
3J92|1|5|A|4708
3J92|1|5|U|4709
3J92|1|5|C|4710

Current chains

Chain 5

28S rRNA

Nearby chains

Chain H

uL6

Chain O

uL13

Chain m

eL40