IL_3J92_174

3D structure

PDB id

3J92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure and assembly pathway of the ribosome quality control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AUCUC*GAUCU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_24024.1

Basepair signature

cWW-cSH-L-cWS-tSW-R-R-cWW

Number of instances in this motif group

11

Unit IDs

3J92|1|7|A|32
3J92|1|7|U|33
3J92|1|7|C|34
3J92|1|7|U|35
3J92|1|7|C|36
*
3J92|1|7|G|41
3J92|1|7|A|42
3J92|1|7|U|43
3J92|1|7|C|44
3J92|1|7|U|45

Current chains

Chain 7

5S rRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain D

uL18

Chain J

uL5