#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5break 6 7 8 9 101-31-104-105-65-106-9
1 IL_3J7Q_1523J7Q0.279607 5S rRNAA32U33C34U35C36*G41A42U43C44U45cSHcWWcWScWWtSW
2 IL_3J92_1743J920.19700Symmetric double minor groove platform (H)7 5S rRNAA32U33C34U35C36*G41A42U43C44U45ncSHcWWcWScWWntSW
3 IL_1MJI_0021MJI0.16970C5S rRNA fragmentA34C35C36C37C38*G44A45A46C47U48ntSWcWWcWScWWtSW
4 IL_4V8P_4444V8P0.16270G3 5S rRNAA32U33C34C35C36*G41A42A43C44U45cWWcWWtSW
5 IL_3J9W_1823J9W0.00000Symmetric double minor groove platform (H)BB 5S rRNAU32U33C34C35C36*G42A43A44C45A46ncSHcWWcWScWWtSW
6 IL_1S72_1021S720.146209 5S rRNAU33A34C35C36C37*G43A44A45C46A47cSHcWWcWScWWtSW
7 IL_4V8C_1154V8C0.15250AB 5S rRNAU34U35C36C37C38*G44A45A46C47A48ncSHcWWcWScWWtSW
8 IL_4WFA_1144WFA0.17830Y 5S rRNAU32U33C34C35C36*G42A43A44C45A46cWWcWScWWtSW
9 IL_4U4U_4574U4U0.18550Symmetric double minor groove platform (H)7 5S rRNAU32U33C34C35C36*G41A42U43C44A45ncSHcWWcWScWWtSW
10 IL_4U26_1734U260.34780Symmetric double minor groove platform (H)BB 5S rRNAA34C35C36C37C38*G44A45A46C47U48ncSHcWWcWScWWtSW
11 IL_5DM6_1155DM60.36570Y 5S rRNAA36C37C38C39C40*G46A47A48C49U50ncSHcWWcWWncsSntSW

3D structures

Complete motif including flanking bases
SequenceCounts
ACCCC*GAACU3
UUCCC*GAACA3
AUCUC*GAUCU2
AUCCC*GAACU1
UACCC*GAACA1
UUCCC*GAUCA1
Non-Watson-Crick part of the motif
SequenceCounts
UCC*AAC4
CCC*AAC3
UCU*AUC2
ACC*AAC1
UCC*AUC1

Release history

Release2.0
Date2017-04-24
StatusNew id, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (7)
  • Symmetric double minor groove platform (H) (4)
  • Basepair signature
    cWW-cSH-L-cWS-tSW-R-R-cWW
    Heat map statistics
    Min 0.11 | Avg 0.24 | Max 0.46
    Help

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