IL_3J92_182

3D structure

PDB id

3J92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure and assembly pathway of the ribosome quality control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGUCCG*CGGC

Length

10 nucleotides

Bulged bases

3J92|1|5|C|485

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J92_182 not in the Motif Atlas

Geometric match to IL_1HYS_004

Geometric discrepancy: 0.3329

The information below is about IL_1HYS_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_64231.5

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

3J92|1|5|G|482
3J92|1|5|G|483
3J92|1|5|U|484
3J92|1|5|C|485
3J92|1|5|C|486
3J92|1|5|G|487
*
3J92|1|5|C|669
3J92|1|5|G|670
3J92|1|5|G|671
3J92|1|5|C|672

Current chains

Chain 5

28S rRNA

Nearby chains

Chain r

eL28