IL_3J9M_023

3D structure

PDB id

3J9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome (class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUAGG*CCACC

Length

10 nucleotides

Bulged bases

3J9M|1|A|A|2172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9M_023 not in the Motif Atlas

Geometric match to IL_4V9F_043

Geometric discrepancy: 0.1863

The information below is about IL_4V9F_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30542.3

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

4

Unit IDs

3J9M|1|A|G|2170
3J9M|1|A|U|2171
3J9M|1|A|A|2172
3J9M|1|A|G|2173
3J9M|1|A|G|2174
*
3J9M|1|A|C|2186
3J9M|1|A|C|2187
3J9M|1|A|A|2188
3J9M|1|A|C|2189
3J9M|1|A|C|2190

Current chains

Chain A

16S rRNA

Nearby chains

Chain J

uL11m

Chain N

uL16m

Chain l

mL54