IL_3J9M_038

3D structure

PDB id

3J9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome (class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCAA*UAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9M_038 not in the Motif Atlas

Geometric match to IL_5TBW_091

Geometric discrepancy: 0.22

The information below is about IL_5TBW_091

Detailed Annotation

Major groove platform with extra pair

Broad Annotation

Major groove platform

Motif group

IL_63450.5

Basepair signature

cWW-cHS-cWW-cWW-cWW

Number of instances in this motif group

7

Unit IDs

3J9M|1|A|G|2712
3J9M|1|A|C|2713
3J9M|1|A|A|2714
3J9M|1|A|A|2715
*
3J9M|1|A|U|3104
3J9M|1|A|A|3105
3J9M|1|A|C|3106

Current chains

Chain A

16S rRNA

Nearby chains

Chain 0

bL32m

Chain E

uL3m

Chain K

uL13m