IL_3J9M_039

3D structure

PDB id

3J9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome (class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

ACG*CUAU

Length

7 nucleotides

Bulged bases

3J9M|1|A|C|2718, 3J9M|1|A|U|3100, 3J9M|1|A|A|3101

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9M_039 not in the Motif Atlas

Homologous match to IL_4WF9_079

Geometric discrepancy: 0.1369

The information below is about IL_4WF9_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_83389.2

Basepair signature

cWW-cWW

Number of instances in this motif group

5

Unit IDs

3J9M|1|A|A|2717
3J9M|1|A|C|2718
3J9M|1|A|G|2719
*
3J9M|1|A|C|3099
3J9M|1|A|U|3100
3J9M|1|A|A|3101
3J9M|1|A|U|3102

Current chains

Chain A

16S rRNA

Nearby chains

Chain 0

bL32m

Chain E

uL3m

Chain T

uL22m