IL_3J9M_042

3D structure

PDB id

3J9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome (class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UAU*AA

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9M_042 not in the Motif Atlas

Geometric match to IL_7A0S_003

Geometric discrepancy: 0.2849

The information below is about IL_7A0S_003

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

58

Unit IDs

3J9M|1|A|U|2744
3J9M|1|A|A|2745
3J9M|1|A|U|2746
*
3J9M|1|A|A|2802
3J9M|1|A|A|2803

Current chains

Chain A

16S rRNA

Nearby chains

Chain X

bL28m