IL_3J9M_060

3D structure

PDB id

3J9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome (class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCUAC*GCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9M_060 not in the Motif Atlas

Geometric match to IL_4WF9_050

Geometric discrepancy: 0.2242

The information below is about IL_4WF9_050

Detailed Annotation

Major groove minor groove platform with tHH

Broad Annotation

No text annotation

Motif group

IL_83150.2

Basepair signature

cWW-tHH-cWW-L-L

Number of instances in this motif group

4

Unit IDs

3J9M|1|A|C|3148
3J9M|1|A|C|3149
3J9M|1|A|U|3150
3J9M|1|A|A|3151
3J9M|1|A|C|3152
*
3J9M|1|A|G|3161
3J9M|1|A|C|3162
3J9M|1|A|G|3163

Current chains

Chain A

16S rRNA

Nearby chains

Chain E

uL3m

Chain L

uL14m

Chain Q

bL19m