IL_3J9M_092

3D structure

PDB id

3J9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome (class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UAUAC*GUG

Length

8 nucleotides

Bulged bases

3J9M|1|AA|U|1259

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9M_092 not in the Motif Atlas

Geometric match to IL_4LFB_044

Geometric discrepancy: 0.1382

The information below is about IL_4LFB_044

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_76319.5

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

3

Unit IDs

3J9M|1|AA|U|1257
3J9M|1|AA|A|1258
3J9M|1|AA|U|1259
3J9M|1|AA|A|1260
3J9M|1|AA|C|1261
*
3J9M|1|AA|G|1334
3J9M|1|AA|U|1335
3J9M|1|AA|G|1336

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AC

uS3m

Chain AD

uS5m

Chain AH

uS10m

Chain AK

uS14m

Chain AZ

mS33