IL_3J9W_008

3D structure

PDB id

3J9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUAAC*GAC

Length

8 nucleotides

Bulged bases

3J9W|1|AA|A|128

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9W_008 not in the Motif Atlas

Homologous match to IL_5J7L_009

Geometric discrepancy: 0.3699

The information below is about IL_5J7L_009

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

3J9W|1|AA|G|126
3J9W|1|AA|U|127
3J9W|1|AA|A|128
3J9W|1|AA|A|129
3J9W|1|AA|C|130
*
3J9W|1|AA|G|239
3J9W|1|AA|A|240
3J9W|1|AA|C|241

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AQ

30S ribosomal protein uS17

Chain AT

30S ribosomal protein bS20