IL_3J9W_011

3D structure

PDB id

3J9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAUUAG*CGACGAUG

Length

14 nucleotides

Bulged bases

3J9W|1|AA|U|252, 3J9W|1|AA|C|288

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02471.1

Basepair signature

cWW-tSS-L-tSH-tSS-tHS-tHS-cWW

Number of instances in this motif group

41

Unit IDs

3J9W|1|AA|C|250
3J9W|1|AA|A|251
3J9W|1|AA|U|252
3J9W|1|AA|U|253
3J9W|1|AA|A|254
3J9W|1|AA|G|255
*
3J9W|1|AA|C|285
3J9W|1|AA|G|286
3J9W|1|AA|A|287
3J9W|1|AA|C|288
3J9W|1|AA|G|289
3J9W|1|AA|A|290
3J9W|1|AA|U|291
3J9W|1|AA|G|292

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AL

30S ribosomal protein uS12

Chain AQ

30S ribosomal protein uS17