IL_3J9W_019

3D structure

PDB id

3J9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

3J9W|1|AA|A|541, 3J9W|1|AA|U|543

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_21801.1

Basepair signature

cWW-R-tWH-cSW-L-R-R-L-tHS-cWW

Number of instances in this motif group

2

Unit IDs

3J9W|1|AA|G|524
3J9W|1|AA|U|525
3J9W|1|AA|G|526
3J9W|1|AA|C|527
3J9W|1|AA|C|528
3J9W|1|AA|A|529
3J9W|1|AA|G|530
*
3J9W|1|AA|C|537
3J9W|1|AA|G|538
3J9W|1|AA|G|539
3J9W|1|AA|U|540
3J9W|1|AA|A|541
3J9W|1|AA|A|542
3J9W|1|AA|U|543
3J9W|1|AA|A|544
3J9W|1|AA|C|545

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AC

30S ribosomal protein uS3

Chain AL

30S ribosomal protein uS12