Motif IL_21801.1 Version IL_21801.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 1-14 | 2-5 | 2-12 | 6-9 | 6-12 | 7-8 | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3J9W_019 | 3J9W | 0.0000 | 2 | AA | SSU rRNA | G | 524 | U | 525 | G | 526 | C | 527 | C | 528 | A | 529 | G | 530 | * | C | 537 | G | 538 | G | 539 | U | 540 | A | 542 | A | 544 | C | 545 | cWW | ncSW | tWH | ntHS | cWW | |
| 2 | IL_5AJ3_015 | 5AJ3 | 0.3401 | 2 | A | SSU rRNA | G | 241 | U | 242 | G | 243 | C | 244 | C | 245 | A | 246 | G | 247 | * | C | 254 | G | 255 | G | 256 | U | 257 | A | 259 | A | 261 | C | 262 | cWW | cSW | ntHS | ntWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUGCCAG*CGGUAAUAC | 1 |
| GUGCCAG*CGGUCAUAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGCCA*GGUAAUA | 1 |
| UGCCA*GGUCAUA | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-R-tWH-cSW-L-R-R-L-tHS-cWW
- Heat map statistics
- Min 0.34 | Avg 0.17 | Max 0.34
Coloring options: