IL_3J9W_030

3D structure

PDB id

3J9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

3J9W|1|AA|A|711

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50446.1

Basepair signature

cWW-tSH-tWH-tHS-tSS-R-cWW

Number of instances in this motif group

2

Unit IDs

3J9W|1|AA|U|693
3J9W|1|AA|G|694
3J9W|1|AA|U|695
3J9W|1|AA|A|696
3J9W|1|AA|G|697
*
3J9W|1|AA|C|708
3J9W|1|AA|G|709
3J9W|1|AA|U|710
3J9W|1|AA|A|711
3J9W|1|AA|G|712
3J9W|1|AA|A|713
3J9W|1|AA|G|714
3J9W|1|AA|A|715

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AK

30S ribosomal protein uS11

Chain BA

Large subunit ribosomal RNA; LSU rRNA