IL_3J9W_048

3D structure

PDB id

3J9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AACAAAG*CACAAAU

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22678.1

Basepair signature

cWW-tWH-tWH-L-R-R-L-tWW-cWW

Number of instances in this motif group

2

Unit IDs

3J9W|1|AA|A|1256
3J9W|1|AA|A|1257
3J9W|1|AA|C|1258
3J9W|1|AA|A|1259
3J9W|1|AA|A|1260
3J9W|1|AA|A|1261
3J9W|1|AA|G|1262
*
3J9W|1|AA|C|1293
3J9W|1|AA|A|1294
3J9W|1|AA|C|1295
3J9W|1|AA|A|1296
3J9W|1|AA|A|1297
3J9W|1|AA|A|1298
3J9W|1|AA|U|1299

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AG

30S ribosomal protein uS7

Chain AI

30S ribosomal protein uS9

Chain AJ

30S ribosomal protein uS10