IL_3J9W_049

3D structure

PDB id

3J9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCAG*CCAAUC

Length

10 nucleotides

Bulged bases

3J9W|1|AA|A|1266, 3J9W|1|AA|A|1289, 3J9W|1|AA|U|1290

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_39249.1

Basepair signature

cWW-cSS-L-R-R-cWW

Number of instances in this motif group

4

Unit IDs

3J9W|1|AA|G|1264
3J9W|1|AA|C|1265
3J9W|1|AA|A|1266
3J9W|1|AA|G|1267
*
3J9W|1|AA|C|1286
3J9W|1|AA|C|1287
3J9W|1|AA|A|1288
3J9W|1|AA|A|1289
3J9W|1|AA|U|1290
3J9W|1|AA|C|1291

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AC

30S ribosomal protein uS3

Chain AJ

30S ribosomal protein uS10

Chain AN

30S ribosomal protein uS14