Motif IL_39249.1 Version IL_39249.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 1-3 | 1-7 | 3-4 | 4-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V4Q_234 | 4V4Q | 0.5149 | 3 | 180 degree turn (H) | CA | SSU rRNA | G | 1255 | A | 1256 | G | 1258 | * | C | 1277 | G | 1278 | G | 1279 | C | 1282 | cSs | cWW | cWW | |
| 2 | IL_1FJG_050 | 1FJG | 0.0000 | 3 | 180 degree turn (H) | A | SSU rRNA | G | 1255 | A | 1256 | G | 1258 | * | C | 1277 | U | 1278 | A | 1279 | C | 1282 | cSs | cWW | cWW | |
| 3 | IL_3J9W_049 | 3J9W | 0.6590 | 3 | 180 degree turn (H) | AA | SSU rRNA | G | 1264 | C | 1265 | G | 1267 | * | C | 1286 | C | 1287 | A | 1288 | C | 1291 | cSs | cWW | cWW | |
| 4 | IL_4V88_460 | 4V88 | 0.7865 | 6 | 180 degree turn | A6 | SSU rRNA | G | 1488 | U | 1489 | C | 1494 | * | G | 1513 | U | 1514 | A | 1515 | C | 1518 | cWW | cWW | cSs |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAAG*CGGACC | 1 |
| GAUG*CUAAUC | 1 |
| GCAG*CCAAUC | 1 |
| GUCUAAC*GUAAUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AA*GGAC | 1 |
| AU*UAAU | 1 |
| CA*CAAU | 1 |
| UCUAA*UAAU | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- 180 degree turn (H) (3)
- 180 degree turn (1)
- Basepair signature
- cWW-cSS-L-R-R-cWW
- Heat map statistics
- Min 0.51 | Avg 0.52 | Max 0.83
Coloring options: