Motif IL_39249.1 Version IL_39249.1 of this group appears in releases 2.0 to 2.0

Download

Csv

Json

Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3	break		4		5		6		7	1-3	1-7	3-4	4-6
1	IL_4V4Q_234	4V4Q	0.5149	3	180 degree turn (H)	CA	SSU rRNA	G	1255	A	1256	G	1258	*	C	1277	G	1278	G	1279	C	1282	cSs	cWW	cWW
2	IL_1FJG_050	1FJG	0.0000	3	180 degree turn (H)	A	SSU rRNA	G	1255	A	1256	G	1258	*	C	1277	U	1278	A	1279	C	1282	cSs	cWW	cWW
3	IL_3J9W_049	3J9W	0.6590	3	180 degree turn (H)	AA	SSU rRNA	G	1264	C	1265	G	1267	*	C	1286	C	1287	A	1288	C	1291	cSs	cWW	cWW
4	IL_4V88_460	4V88	0.7865	6	180 degree turn	A6	SSU rRNA	G	1488	U	1489	C	1494	*	G	1513	U	1514	A	1515	C	1518		cWW	cWW	cSs

3D structures

Complete motif including flanking bases

Sequence	Counts
GAAG*CGGACC	1
GAUG*CUAAUC	1
GCAG*CCAAUC	1
GUCUAAC*GUAAUC	1

Non-Watson-Crick part of the motif

Sequence	Counts
AA*GGAC	1
AU*UAAU	1
CA*CAAU	1
UCUAA*UAAU	1

Release history

Release	2.0
Date	2017-04-24
Status	New id, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: 180 degree turn (H) (3)
180 degree turn (1)
Basepair signature: cWW-cSS-L-R-R-cWW
Heat map statistics: Min 0.51 | Avg 0.52 | Max 0.83

Help

loadScript https://rna.bgsu.edu/rna3dhub//js/jsmol/j2s//core/package.js

loadScript https://rna.bgsu.edu/rna3dhub//js/jsmol/j2s//core/corejmol.z.js

JSmol exec jmolApplet0 start applet null

Jmol JavaScript applet jmolApplet0__780400352522819__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jmolApplet0__780400352522819__)

vwrOptions:

{ "name":"jmolApplet0","applet":true,"documentBase":"https://rna.bgsu.edu/rna3dhub/motif/view/IL_39249.1","platform":"J.awtjs2d.Platform","fullName":"jmolApplet0__780400352522819__","codePath":"https://rna.bgsu.edu/rna3dhub//js/jsmol/j2s//","display":"jmolApplet0_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"780400352522819","bgcolor":"white" }

setting document base to "https://rna.bgsu.edu/rna3dhub/motif/view/IL_39249.1"

Jmol Version: 14.4.4_2016.04.25 2016-04-26 17:41

java.vendor: Java2Script (HTML5)

java.version: 2016-04-21 14:47:41 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jmolApplet0 (signed)

loadScript https://rna.bgsu.edu/rna3dhub//js/jsmol/j2s//core/corescript.z.js

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor white

backgroundColor = "white"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

Jmol getValue ATOMMOVEDCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue SERVICECallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SYNCCallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jmolApplet0__780400352522819__ ready

script 1 started

loadScript https://rna.bgsu.edu/rna3dhub//js/jsmol/j2s//core/coretext.z.js

Script completed

Jmol script terminated

script 2 started