IL_3J9W_068

3D structure

PDB id

3J9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGGAG*CUUUGAUC

Length

13 nucleotides

Bulged bases

3J9W|1|BA|U|100

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02471.1

Basepair signature

cWW-tSS-L-tSH-tSS-tHS-tHS-cWW

Number of instances in this motif group

41

Unit IDs

3J9W|1|BA|G|81
3J9W|1|BA|G|82
3J9W|1|BA|G|83
3J9W|1|BA|A|84
3J9W|1|BA|G|85
*
3J9W|1|BA|C|97
3J9W|1|BA|U|98
3J9W|1|BA|U|99
3J9W|1|BA|U|100
3J9W|1|BA|G|101
3J9W|1|BA|A|102
3J9W|1|BA|U|103
3J9W|1|BA|C|104

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B1

50S ribosomal protein uL29

Chain BX

50S ribosomal protein uL24