IL_3J9W_070

3D structure

PDB id

3J9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86124.1

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

32

Unit IDs

3J9W|1|BA|G|191
3J9W|1|BA|G|192
3J9W|1|BA|A|193
3J9W|1|BA|A|194
3J9W|1|BA|C|195
3J9W|1|BA|U|196
3J9W|1|BA|G|197
*
3J9W|1|BA|C|204
3J9W|1|BA|U|205
3J9W|1|BA|A|206
3J9W|1|BA|A|207
3J9W|1|BA|G|208
3J9W|1|BA|U|209
3J9W|1|BA|A|210
3J9W|1|BA|C|211

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B0

50S ribosomal protein bL28

Chain B6

50S ribosomal protein bL34

Chain BO

50S ribosomal protein uL15