IL_3J9W_113

3D structure

PDB id

3J9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AUGAGUAG*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86124.1

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

32

Unit IDs

3J9W|1|BA|A|1302
3J9W|1|BA|U|1303
3J9W|1|BA|G|1304
3J9W|1|BA|A|1305
3J9W|1|BA|G|1306
3J9W|1|BA|U|1307
3J9W|1|BA|A|1308
3J9W|1|BA|G|1309
*
3J9W|1|BA|U|2040
3J9W|1|BA|G|2041
3J9W|1|BA|A|2042
3J9W|1|BA|A|2043
3J9W|1|BA|A|2044
3J9W|1|BA|U|2045
3J9W|1|BA|U|2046

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B4

50S ribosomal protein bL32

Chain BF

50S ribosomal protein uL4

Chain BV

50S ribosomal protein uL22