IL_3J9W_188
3D structure
- PDB id
- 3J9W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GGAAU*GGAAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J9W_188 not in the Motif Atlas
- Homologous match to IL_5J7L_361
- Geometric discrepancy: 0.125
- The information below is about IL_5J7L_361
- Detailed Annotation
- Triple non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_49751.4
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
3J9W|1|AA|G|682
3J9W|1|AA|G|683
3J9W|1|AA|A|684
3J9W|1|AA|A|685
3J9W|1|AA|U|686
*
3J9W|1|AA|G|722
3J9W|1|AA|G|723
3J9W|1|AA|A|724
3J9W|1|AA|A|725
3J9W|1|AA|C|726
Current chains
- Chain AA
- 16S ribosomal RNA
Nearby chains
- Chain AF
- 30S ribosomal protein bS6
- Chain AK
- 30S ribosomal protein uS11
- Chain AR
- 30S ribosomal protein bS18
- Chain BD
- 50S ribosomal protein uL2
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