IL_3J9W_193

3D structure

PDB id

3J9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGAACUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9W_193 not in the Motif Atlas

Homologous match to IL_4WF9_117

Geometric discrepancy: 0.2539

The information below is about IL_4WF9_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.1

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

10

Unit IDs

3J9W|1|BA|G|1711
3J9W|1|BA|G|1712
3J9W|1|BA|A|1713
3J9W|1|BA|A|1714
3J9W|1|BA|C|1715
3J9W|1|BA|U|1716
3J9W|1|BA|C|1717
3J9W|1|BA|G|1718
3J9W|1|BA|G|1719
*
3J9W|1|BA|C|2019
3J9W|1|BA|U|2020
3J9W|1|BA|G|2021
3J9W|1|BA|U|2022
3J9W|1|BA|C|2023

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BE

50S ribosomal protein uL3

Chain BN

50S ribosomal protein uL14