IL_3J9W_194

3D structure

PDB id

3J9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UAAC*GA

Length

6 nucleotides

Bulged bases

3J9W|1|AA|A|128, 3J9W|1|AA|A|129

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9W_194 not in the Motif Atlas

Homologous match to IL_6CZR_119

Geometric discrepancy: 0.4179

The information below is about IL_6CZR_119

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_33761.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

3J9W|1|AA|U|127
3J9W|1|AA|A|128
3J9W|1|AA|A|129
3J9W|1|AA|C|130
*
3J9W|1|AA|G|239
3J9W|1|AA|A|240

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AQ

30S ribosomal protein uS17

Chain AT

30S ribosomal protein bS20