IL_3J9W_196

3D structure

PDB id

3J9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUUG*CACUC

Length

9 nucleotides

Bulged bases

3J9W|1|AA|U|1136

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9W_196 not in the Motif Atlas

Homologous match to IL_6CZR_158

Geometric discrepancy: 0.3631

The information below is about IL_6CZR_158

Detailed Annotation

Minor groove platform

Broad Annotation

Minor groove platform

Motif group

IL_40144.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

3J9W|1|AA|G|1134
3J9W|1|AA|U|1135
3J9W|1|AA|U|1136
3J9W|1|AA|G|1137
*
3J9W|1|AA|C|1154
3J9W|1|AA|A|1155
3J9W|1|AA|C|1156
3J9W|1|AA|U|1157
3J9W|1|AA|C|1158

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AI

30S ribosomal protein uS9

Chain AJ

30S ribosomal protein uS10