IL_3J9W_199

3D structure

PDB id

3J9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUAAG*UAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9W_199 not in the Motif Atlas

Homologous match to IL_4WF9_029

Geometric discrepancy: 0.4312

The information below is about IL_4WF9_029

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06300.1

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

3J9W|1|BA|G|891
3J9W|1|BA|U|892
3J9W|1|BA|A|893
3J9W|1|BA|A|894
3J9W|1|BA|G|895
*
3J9W|1|BA|U|977
3J9W|1|BA|A|978
3J9W|1|BA|U|979
3J9W|1|BA|C|980

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B2

50S ribosomal protein uL30