IL_3J9Y_169

3D structure

PDB id

3J9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9Y_169 not in the Motif Atlas

Homologous match to IL_4LFB_055

Geometric discrepancy: 0.1043

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

3J9Y|1|a|C|1303
3J9Y|1|a|G|1304
3J9Y|1|a|G|1305
3J9Y|1|a|A|1306
3J9Y|1|a|U|1307
3J9Y|1|a|U|1308
*
3J9Y|1|a|A|1329
3J9Y|1|a|U|1330
3J9Y|1|a|G|1331
3J9Y|1|a|A|1332
3J9Y|1|a|A|1333
3J9Y|1|a|G|1334

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain m

30S ribosomal protein S13