IL_3J9Z_015

3D structure

PDB id

3J9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UUAAC*GGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9Z_015 not in the Motif Atlas

Homologous match to IL_5J7L_258

Geometric discrepancy: 0.1012

The information below is about IL_5J7L_258

Detailed Annotation

AAA cross-strand stack

Broad Annotation

AAA cross-strand stack

Motif group

IL_66798.2

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

6

Unit IDs

3J9Z|1|LA|U|606
3J9Z|1|LA|U|607
3J9Z|1|LA|A|608
3J9Z|1|LA|A|609
3J9Z|1|LA|C|610
*
3J9Z|1|LA|G|618
3J9Z|1|LA|G|619
3J9Z|1|LA|G|620
3J9Z|1|LA|A|621
3J9Z|1|LA|G|622

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain L6

50S ribosomal protein L4

Chain LH

50S ribosomal protein L15