IL_3J9Z_017

3D structure

PDB id

3J9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

3J9Z|1|LA|G|801, 3J9Z|1|LA|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9Z_017 not in the Motif Atlas

Geometric match to IL_5J7L_260

Geometric discrepancy: 0.1306

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

3J9Z|1|LA|G|674
3J9Z|1|LA|A|675
3J9Z|1|LA|A|676
3J9Z|1|LA|A|677
3J9Z|1|LA|C|678
*
3J9Z|1|LA|G|799
3J9Z|1|LA|A|800
3J9Z|1|LA|G|801
3J9Z|1|LA|A|802
3J9Z|1|LA|U|803
3J9Z|1|LA|A|804
3J9Z|1|LA|G|805
3J9Z|1|LA|C|806

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain L6

50S ribosomal protein L4

Chain LH

50S ribosomal protein L15