3D structure

PDB id
3J9Z (explore in PDB, NAKB, or RNA 3D Hub)
Description
Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
CCCAGACAG*UCGAG
Length
14 nucleotides
Bulged bases
3J9Z|1|LA|A|1046
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3J9Z_042 not in the Motif Atlas
Homologous match to IL_5J7L_284
Geometric discrepancy: 0.2235
The information below is about IL_5J7L_284
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_99692.2
Basepair signature
cWW-tSS-tSH-L-R-R-L-cWW-L-L
Number of instances in this motif group
6

Unit IDs

3J9Z|1|LA|C|1043
3J9Z|1|LA|C|1044
3J9Z|1|LA|C|1045
3J9Z|1|LA|A|1046
3J9Z|1|LA|G|1047
3J9Z|1|LA|A|1048
3J9Z|1|LA|C|1049
3J9Z|1|LA|A|1050
3J9Z|1|LA|G|1051
*
3J9Z|1|LA|U|1108
3J9Z|1|LA|C|1109
3J9Z|1|LA|G|1110
3J9Z|1|LA|A|1111
3J9Z|1|LA|G|1112

Current chains

Chain LA
23S ribosomal RNA

Nearby chains

Chain L8
50S ribosomal protein L6
Chain LD
50S ribosomal protein L10

Coloring options:


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