IL_3J9Z_047

3D structure

PDB id

3J9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

3J9Z|1|LA|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9Z_047 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.1206

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

3J9Z|1|LA|C|1208
3J9Z|1|LA|U|1209
3J9Z|1|LA|G|1210
3J9Z|1|LA|C|1211
3J9Z|1|LA|G|1212
3J9Z|1|LA|A|1213
3J9Z|1|LA|A|1214
3J9Z|1|LA|G|1215
*
3J9Z|1|LA|U|1234
3J9Z|1|LA|G|1235
3J9Z|1|LA|G|1236
3J9Z|1|LA|A|1237
3J9Z|1|LA|G|1238

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain LO

50S ribosomal protein L20