IL_3J9Z_048
3D structure
- PDB id
- 3J9Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- AUAAGUAAC*GUGAAAUU
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J9Z_048 not in the Motif Atlas
- Geometric match to IL_4WF9_008
- Geometric discrepancy: 0.2771
- The information below is about IL_4WF9_008
- Detailed Annotation
- 9x8 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_84694.2
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
3J9Z|1|LA|A|1262
3J9Z|1|LA|U|1263
3J9Z|1|LA|A|1264
3J9Z|1|LA|A|1265
3J9Z|1|LA|G|1266
3J9Z|1|LA|U|1267
3J9Z|1|LA|A|1268
3J9Z|1|LA|A|1269
3J9Z|1|LA|C|1270
*
3J9Z|1|LA|G|2010
3J9Z|1|LA|U|2011
3J9Z|1|LA|G|2012
3J9Z|1|LA|A|2013
3J9Z|1|LA|A|2014
3J9Z|1|LA|A|2015
3J9Z|1|LA|U|2016
3J9Z|1|LA|U|2017
Current chains
- Chain LA
- 23S ribosomal RNA
Nearby chains
- Chain L1
- 50S ribosomal protein L32
- Chain L6
- 50S ribosomal protein L4
- Chain LJ
- 50S ribosomal protein L17
- Chain LQ
- 50S ribosomal protein L22
Coloring options: