IL_3J9Z_050

3D structure

PDB id

3J9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCAAC*GGG

Length

8 nucleotides

Bulged bases

3J9Z|1|LA|G|1332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9Z_050 not in the Motif Atlas

Homologous match to IL_5J7L_291

Geometric discrepancy: 0.3754

The information below is about IL_5J7L_291

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

3J9Z|1|LA|C|1319
3J9Z|1|LA|C|1320
3J9Z|1|LA|A|1321
3J9Z|1|LA|A|1322
3J9Z|1|LA|C|1323
*
3J9Z|1|LA|G|1331
3J9Z|1|LA|G|1332
3J9Z|1|LA|G|1333

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain LQ

50S ribosomal protein L22