IL_3J9Z_061

3D structure

PDB id

3J9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGAG*UGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9Z_061 not in the Motif Atlas

Homologous match to IL_5J7L_303

Geometric discrepancy: 0.1457

The information below is about IL_5J7L_303

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

3J9Z|1|LA|C|1526
3J9Z|1|LA|G|1527
3J9Z|1|LA|A|1528
3J9Z|1|LA|G|1529
*
3J9Z|1|LA|U|1542
3J9Z|1|LA|G|1543
3J9Z|1|LA|A|1544
3J9Z|1|LA|A|1545
3J9Z|1|LA|G|1546

Current chains

Chain LA

23S ribosomal RNA

Nearby chains