IL_3J9Z_064

3D structure

PDB id

3J9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGAA*UC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9Z_064 not in the Motif Atlas

Geometric match to IL_7RQB_066

Geometric discrepancy: 0.1278

The information below is about IL_7RQB_066

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_50694.2

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

3J9Z|1|LA|G|1666
3J9Z|1|LA|G|1667
3J9Z|1|LA|A|1668
3J9Z|1|LA|A|1669
*
3J9Z|1|LA|U|1993
3J9Z|1|LA|C|1994

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain LG

50S ribosomal protein L14

Chain LX

50S ribosomal protein L3