3D structure

PDB id
3J9Z (explore in PDB, NAKB, or RNA 3D Hub)
Description
Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
UGAUG*CUUUA
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3J9Z_085 not in the Motif Atlas
Geometric match to IL_8D29_010
Geometric discrepancy: 0.3919
The information below is about IL_8D29_010
Detailed Annotation
Partly complementary
Broad Annotation
Partly complementary
Motif group
IL_49751.4
Basepair signature
cWW-cWW-cWW-cWW-cWW
Number of instances in this motif group
16

Unit IDs

3J9Z|1|LA|U|2106
3J9Z|1|LA|G|2107
3J9Z|1|LA|A|2108
3J9Z|1|LA|U|2109
3J9Z|1|LA|G|2110
*
3J9Z|1|LA|C|2179
3J9Z|1|LA|U|2180
3J9Z|1|LA|U|2181
3J9Z|1|LA|U|2182
3J9Z|1|LA|A|2183

Current chains

Chain LA
23S ribosomal RNA

Nearby chains

Chain LC
50S ribosomal protein L1
Chain S7
Transfer RNA; tRNA

Coloring options:


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