3D structure

PDB id
3J9Z (explore in PDB, NAKB, or RNA 3D Hub)
Description
Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
GG*CAC
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3J9Z_093 not in the Motif Atlas
Geometric match to IL_4WF9_090
Geometric discrepancy: 0.1612
The information below is about IL_4WF9_090
Detailed Annotation
Major groove platform
Broad Annotation
No text annotation
Motif group
IL_48076.6
Basepair signature
cWW-cSH-cWW
Number of instances in this motif group
41

Unit IDs

3J9Z|1|LA|G|2454
3J9Z|1|LA|G|2455
*
3J9Z|1|LA|C|2496
3J9Z|1|LA|A|2497
3J9Z|1|LA|C|2498

Current chains

Chain LA
23S ribosomal RNA

Nearby chains

Chain LI
50S ribosomal protein L16
Chain LU
50S ribosomal protein L27
Chain LX
50S ribosomal protein L3

Coloring options:


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