IL_3J9Z_103

3D structure

PDB id

3J9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9Z_103 not in the Motif Atlas

Homologous match to IL_7RQB_103

Geometric discrepancy: 0.2409

The information below is about IL_7RQB_103

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

3J9Z|1|LA|C|2652
3J9Z|1|LA|U|2653
3J9Z|1|LA|A|2654
3J9Z|1|LA|G|2655
3J9Z|1|LA|U|2656
3J9Z|1|LA|A|2657
3J9Z|1|LA|C|2658
*
3J9Z|1|LA|G|2663
3J9Z|1|LA|G|2664
3J9Z|1|LA|A|2665
3J9Z|1|LA|C|2666
3J9Z|1|LA|C|2667
3J9Z|1|LA|G|2668

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain L8

50S ribosomal protein L6

Chain S1

Elongation factor G