IL_3J9Z_107

3D structure

PDB id

3J9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAUAAG*CGAAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9Z_107 not in the Motif Atlas

Homologous match to IL_5J7L_350

Geometric discrepancy: 0.1125

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

3J9Z|1|LA|G|2737
3J9Z|1|LA|A|2738
3J9Z|1|LA|U|2739
3J9Z|1|LA|A|2740
3J9Z|1|LA|A|2741
3J9Z|1|LA|G|2742
*
3J9Z|1|LA|C|2762
3J9Z|1|LA|G|2763
3J9Z|1|LA|A|2764
3J9Z|1|LA|A|2765
3J9Z|1|LA|A|2766
3J9Z|1|LA|C|2767

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain L5

50S ribosomal protein L36

Chain L8

50S ribosomal protein L6

Chain LF

50S ribosomal protein L13